Gbif Biodiversity MCP Server
未申請Search GBIF species taxonomy, occurrence records, datasets, and publishers via MCP. STDIO or Streamable HTTP.
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basisOfRecord
enum: HUMANOBSERVATION, PRESERVEDSPECIMEN, MACHINEOBSERVATION, and more
country
here is unconstrained on purpose: the registry endpoint matches the parsed country rather than the verbatim string, so gb, GBR, and GB all return the same 223 organizations. The uppercase-only rule the occurrence tools and gbifsearchdatasets carry exists to close a silent zero that does not occur on
extinct
field present only when explicitly flagged — not false on unlabeled taxa
gbif_bulk_match_species
Match up to 50 scientific names to backbone taxon keys in one call — results in input order, per-name NONE/ERROR isolation
gbif_count_occurrences
Count occurrences matching a filter without fetching records — fast single-number response, filtered to sightings by default
gbif_get_dataset
Fetch full dataset metadata by UUID — title, description, citation, contacts, license, DOI, coverage
gbif_get_occurrence
Fetch a single occurrence record by key — full Darwin Core record with GADM geography, presence/absence status, conservation status, media, and quality flags
gbif_get_species
Fetch a single backbone taxon by key — full classification, authorship, synonymy, vernacular name, descendant count
gbif_get_species_children
List direct children of a backbone taxon — genera within a family, species within a genus
gbif_get_species_classification
Return the root-to-parent classification chain for a taxon — root-first ordered array from kingdom to the queried taxon's immediate parent (the taxon itself is not included)
gbif_match_species
Match a species name against the GBIF backbone taxonomy — returns taxonKey, confidence score, and full classification
gbif_occurrence_facets
Aggregate occurrence counts by a dimension — country, year, basis of record, dataset, kingdom, presence/absence, IUCN Red List category
gbif_search_datasets
Search GBIF datasets by keyword, type, country, publishing organization, or hosting organization
gbif_search_occurrences
Search 3.9B+ GBIF occurrence records with Darwin Core filters — country, publishing country, state/province, bounding box, WKT geometry, year, month, basis of record, presence/absence, IUCN Red List category
gbif_search_publishers
Search GBIF-registered publishing organizations by name fragment or country
gbif_search_species
Search or browse the GBIF backbone taxonomy by name fragment, rank, or a kingdom, family, or genus name resolved to its backbone key
hasCoordinate
to require or exclude georeferenced records
isExtinct
filter for extinct vs. extant taxa
iucnRedListCategory
CR, EN, VU, NT, LC, DD, EX, EW, CD
kingdom
disambiguates a name that appears in more than one kingdom, and is rejected when supplied blank: GBIF drops a blank one and matches against the whole backbone — Parus major resolves to taxon 9705453 with kingdom= exactly as it does with no kingdom at all, where Plantae resolves to 9711704 — so the u
numConstituents
for aggregate datasets (e.g. iNaturalist, eBird)
numDescendants
and numOccurrences for scope at a glance
occurrenceID
, full classification (class/classKey), GADM administrative units (levels 0–3, each with a stable GID and name), and source identifiers
occurrenceStatus
PRESENT (default), ABSENT, or ANY. GBIF indexes absence records (a survey that looked for the taxon and did not find it) alongside sightings; the default excludes them and the enrichment says so on every call
publishedIn
carries the original description citation when available
publishingCountry
(ISO 3166-1 alpha-2, uppercase) is the country of the publishing organization, not of the observation — a different question from country, and the two disagree on most records: of 60,290,950 records observed in GB, 1,548,928 were published by US organizations
recordCount
the indexed occurrence total, matching what gbifsearchdatasets reports, for every dataset type (a CHECKLIST reports 0). It spans every occurrenceStatus, absences included; gbifcountoccurrences with the same key counts sightings only by default, so the two figures differ by design
stateProvince
is matched verbatim — exact and case-sensitive, with no controlled vocabulary behind it. Take a value from a STATEPROVINCE facet rather than guessing; an unmatched value returns zero records instead of an error, and the enrichment notice says so when it happens
taxonomicStatus
ACCEPTED, SYNONYM, DOUBTFUL — when SYNONYM, acceptedKey and accepted identify the current name