How do I connect Bio MCP Server to Claude?

The listing records `bio-mcp` as its setup step. Run it, then follow the repository's instructions for the client configuration; the listing names Cursor, VS Code as compatible clients.

Is Bio MCP Server free?

The listed licence is MIT. Check the upstream terms for permitted use and commercial requirements; a public repository does not by itself mean the software is free or open source. Connected APIs and hosted services may have separate charges.

What can Bio MCP Server do?

Bio MCP Server documents 40 tools to the agent, including alphafold_structure, biogrid_gene_interactions, biogrid_interactions. The descriptions above come from project documentation. A live handshake does not test individual tool behavior.

Bio MCP

Unclaimed

by qgeng1465

🧬 BioMCP — 生物信息学 MCP 服务器：PubMed/NCBI/BLAST/PDB/UniProt/富集分析，让任意 AI 助手直连生物数据库。Open-source bioinformatics MCP server.

Install

$bio-mcp

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This server needs project-specific setup. Follow the project instructions; no reusable public launch command is available yet.

Project instructions

bioinformaticsgenomicsmcp-serverncbiuniprotalphafoldensemblsingle-cellstring-dbvariant-annotation

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40 of 40 tools

Documented tools (40)

From project documentation. A server handshake does not verify each tool’s description or behavior.

alphafold_structure

AI-predicted structures

biogrid_gene_interactions

gene interactions

biogrid_interactions

interactions

blast_search

homology search

clinvar_query

clinical variant classification

dbsnp_search

variant search

emdb_structure_lookup

cryo-EM structures

ensembl_gene_lookup

gene lookup

ensembl_homologs

homologous genes

europepmc_search

full-text + open-access

gene_enrichment

enrichment analysis

gene_go_annotation

GO annotations by gene

genome_assembly_search

genome assemblies

geo_dataset_search

expression dataset search

get_analysis_template

Get analysis scenario templates

gnomad_gene_constraint

LOEUF)/ gene constraint metrics

gnomad_variant_lookup

allele frequency

go_term_lookup

GO term details

go_term_search

GO term search

gwas_gene_variants

GWAS variants by gene

gwas_variant_associations

variant-trait associations

hgnc_gene_symbol

canonical symbol & aliases

hgnc_search

gene symbol search

intact_interactions

experimental interactions

intelligent_analyze

Intelligent data analysis and tool recommendation

kegg_pathway_genes

genes in a pathway

kegg_pathway_search

pathway search

ncbi_fetch_sequence

fetch sequences

openalex_work_search

scholarly works search

pdb_structure_summary

experimental structures

protein_domains

structural domains

pubmed_search

literature search

reactome_pathway_search

pathway search

string_interactions

protein interaction network

taxonomy_lookup

species taxonomy

ucsc_genome_info

genome assemblies

uniparc_by_id

record by UPI ID

uniparc_search

protein archive search

uniprot_annotate

protein annotations

variant_annotate

variant annotation

Tool change history

Compared across complete checks of the same configuration. Tools were listed, not invoked. Input-schema changes are not measured here.

No complete tool checks yet.

FAQ

Questions about Bio MCP Server

How do I connect Bio MCP Server to Claude?: The listing records `bio-mcp` as its setup step. Run it, then follow the repository's instructions for the client configuration; the listing names Cursor, VS Code as compatible clients.
Is Bio MCP Server free?: The listed licence is MIT. Check the upstream terms for permitted use and commercial requirements; a public repository does not by itself mean the software is free or open source. Connected APIs and hosted services may have separate charges.
What can Bio MCP Server do?: Bio MCP Server documents 40 tools to the agent, including alphafold_structure, biogrid_gene_interactions, biogrid_interactions. The descriptions above come from project documentation. A live handshake does not test individual tool behavior.