Papergraph MCP
VerifiedPaperGraph MCP turns math papers into evidence-grounded reading maps for AI agents: extract results, trace proof evidence, plan reading order, and review external dependencies without guessing.
Install
uvx --from git+https://github.com/lotchuazzz-crypto/papergraph-mcp.git@v0.6.1 papergraph-mcpSet up this server
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Security profile
Exposure: Broad
Reaches into the environment, credential files or other agents' configuration.
What this server can reach, from a static read of the shipped code. Nothing was executed and nothing here is a verdict: a browser tool has to run commands and an API wrapper has to call its API. Decide what fits your setup.
Detected
- Talks to external services
Makes outbound requests. The hosts are listed so you can see where data goes.
api.crossref.org, api.openalex.org
- Reads environment variables in bulk
Copies or enumerates the whole environment, which can include keys meant for other tools.
- Runs shell commands
Spawns processes on your machine. Expected for command, browser and build tools.
- Reads or writes other agents' configuration
Touches folders such as ~/.claude, ~/.codex or ~/.cursor, which hold settings and sometimes keys.
- Installs itself to run later
Writes startup entries, cron jobs or state files that outlive the session.
- Contains instructions aimed at AI agents
Text in code or agent-facing files that steers a model. Worth reading before you trust it.
- Passes model output on without checks
Model output reaches HTML, SQL or a shell without validation.
- Runs unpinned packages at runtime
Executes npx or uvx without a version, so a compromised upstream release would run.
Dependencies with known advisories
None found in the lockfiles and manifests checked against OSV.dev.
Left out of the profile
5 pattern matches in documentation, configuration or CI files were recorded but are not part of the profile, because they do not run when the server does. The owner dashboard lists them.
0 of 0 tools · Observed tool names: 67/67
Observed tool names (67)
Reported by a complete handshake for the current saved configuration. Tools were listed, not invoked.
· 1.3.0
discover_doi_paperget_dependenciesget_dependency_diagnosticsget_environment_diagnosticsget_theoremlist_theoremsload_arxiv_paperload_arxiv_requestload_paperopen_workspacevalidate_arxiv_inputvalidate_arxiv_requestwhere_usedworkspace_add_arxiv_paperworkspace_add_doi_paperworkspace_add_local_paperworkspace_add_pdf_paperworkspace_add_reading_noteworkspace_advance_reference_expansionworkspace_apply_reading_queue_to_sessionworkspace_bootstrap_reading_projectworkspace_cancel_reference_expansionworkspace_create_reading_queueworkspace_create_reading_sessionworkspace_create_reference_expansionworkspace_decide_reference_expansionworkspace_export_cross_paper_reading_planworkspace_export_paper_reading_reportworkspace_export_reading_bundleworkspace_export_reading_session_summaryworkspace_export_reference_expansionworkspace_export_result_reading_contextworkspace_get_citationsworkspace_get_dependenciesworkspace_get_dependency_diagnosticsworkspace_get_dependency_readingworkspace_get_evidenceworkspace_get_external_result_mentionsworkspace_get_paperworkspace_get_paper_mapworkspace_get_proof_dependenciesworkspace_get_reading_queueworkspace_get_reading_sessionworkspace_get_reference_expansionworkspace_get_resultworkspace_get_result_proofworkspace_get_result_reading_pathworkspace_get_source_sliceworkspace_import_doi_candidateworkspace_list_external_reference_resolutionsworkspace_list_external_reference_searchesworkspace_list_papersworkspace_list_reading_queuesworkspace_list_reading_sessionsworkspace_list_reference_expansionsworkspace_list_resultsworkspace_pause_reference_expansionworkspace_plan_external_imports_for_paperworkspace_plan_external_imports_for_queueworkspace_plan_external_imports_for_resultworkspace_plan_starter_projectworkspace_record_reading_checkpointworkspace_resolve_external_referenceworkspace_resolve_external_reference_candidateworkspace_search_external_referenceworkspace_search_theoremsworkspace_update_reference_expansion_policyDocumented tools (0)
From project documentation. A server handshake does not verify each tool’s description or behavior.
Tool descriptions have not been documented here yet.
Tool change history
Nov 11, 2026, 03:24 AM UTC
Nov 3, 2026, 03:24 AM UTC
Oct 26, 2026, 03:23 AM UTC
Oct 19, 2026, 02:22 AM UTC
Oct 11, 2026, 02:32 AM UTC
FAQ
Questions about Papergraph MCP Server
- How do I connect Papergraph MCP Server to Claude?
- The listing records `uvx --from git+https://github.com/lotchuazzz-crypto/papergraph-mcp.git@v0.6.1 papergraph-mcp` as its setup step. Run it, then follow the repository's instructions for the client configuration; the listing names Claude Code, Cursor and Claude Desktop as compatible clients.
- Is Papergraph MCP Server free?
- The listed licence is MIT. Check the upstream terms for permitted use and commercial requirements; a public repository does not by itself mean the software is free or open source. Connected APIs and hosted services may have separate charges.
- What can Papergraph MCP Server do?
- MCPVault has not yet recorded the tool list for Papergraph MCP Server; it is captured when the server passes a live MCP handshake. The description above is what the project publishes.