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Papergraph MCP

Verified

by lotchuazzz-crypto

PaperGraph MCP turns math papers into evidence-grounded reading maps for AI agents: extract results, trace proof evidence, plan reading order, and review external dependencies without guessing.

Install

$uvx --from git+https://github.com/lotchuazzz-crypto/papergraph-mcp.git@v0.6.1 papergraph-mcp

Set up this server

This server needs project-specific setup. Follow the project instructions; no reusable public launch command is available yet.

Project instructions
ai-agentsarxivknowledge-graphlatexmathematicsmcpmodel-context-protocolpythonresearch-toolsskills

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Security profile

Exposure: Broad

Reaches into the environment, credential files or other agents' configuration.

What this server can reach, from a static read of the shipped code. Nothing was executed and nothing here is a verdict: a browser tool has to run commands and an API wrapper has to call its API. Decide what fits your setup.

NVIDIA SkillSpector v2.11.0, MCPVault MCP-server policy. Scanned 4 days ago @ af7f302.

Detected

  • Talks to external services4 places

    Makes outbound requests. The hosts are listed so you can see where data goes.

    api.crossref.org, api.openalex.org

  • Reads environment variables in bulk5 places

    Copies or enumerates the whole environment, which can include keys meant for other tools.

  • Runs shell commands22 places

    Spawns processes on your machine. Expected for command, browser and build tools.

  • Reads or writes other agents' configuration2 places

    Touches folders such as ~/.claude, ~/.codex or ~/.cursor, which hold settings and sometimes keys.

  • Installs itself to run later1 places

    Writes startup entries, cron jobs or state files that outlive the session.

  • Contains instructions aimed at AI agents2 places

    Text in code or agent-facing files that steers a model. Worth reading before you trust it.

  • Passes model output on without checks2 places

    Model output reaches HTML, SQL or a shell without validation.

  • Runs unpinned packages at runtime7 places

    Executes npx or uvx without a version, so a compromised upstream release would run.

Not detected: sends conversation content outward, accesses credential files, uses elevated privileges, matches a known malicious pattern.

Dependencies with known advisories

None found in the lockfiles and manifests checked against OSV.dev.

Left out of the profile

5 pattern matches in documentation, configuration or CI files were recorded but are not part of the profile, because they do not run when the server does. The owner dashboard lists them.

How the profile works Maintainers see file, line and a fix for each item in their dashboard.
67Tools reported by the last successful handshake

0 of 0 tools · Observed tool names: 67/67

Observed tool names (67)

Reported by a complete handshake for the current saved configuration. Tools were listed, not invoked.

· 1.3.0

discover_doi_paperget_dependenciesget_dependency_diagnosticsget_environment_diagnosticsget_theoremlist_theoremsload_arxiv_paperload_arxiv_requestload_paperopen_workspacevalidate_arxiv_inputvalidate_arxiv_requestwhere_usedworkspace_add_arxiv_paperworkspace_add_doi_paperworkspace_add_local_paperworkspace_add_pdf_paperworkspace_add_reading_noteworkspace_advance_reference_expansionworkspace_apply_reading_queue_to_sessionworkspace_bootstrap_reading_projectworkspace_cancel_reference_expansionworkspace_create_reading_queueworkspace_create_reading_sessionworkspace_create_reference_expansionworkspace_decide_reference_expansionworkspace_export_cross_paper_reading_planworkspace_export_paper_reading_reportworkspace_export_reading_bundleworkspace_export_reading_session_summaryworkspace_export_reference_expansionworkspace_export_result_reading_contextworkspace_get_citationsworkspace_get_dependenciesworkspace_get_dependency_diagnosticsworkspace_get_dependency_readingworkspace_get_evidenceworkspace_get_external_result_mentionsworkspace_get_paperworkspace_get_paper_mapworkspace_get_proof_dependenciesworkspace_get_reading_queueworkspace_get_reading_sessionworkspace_get_reference_expansionworkspace_get_resultworkspace_get_result_proofworkspace_get_result_reading_pathworkspace_get_source_sliceworkspace_import_doi_candidateworkspace_list_external_reference_resolutionsworkspace_list_external_reference_searchesworkspace_list_papersworkspace_list_reading_queuesworkspace_list_reading_sessionsworkspace_list_reference_expansionsworkspace_list_resultsworkspace_pause_reference_expansionworkspace_plan_external_imports_for_paperworkspace_plan_external_imports_for_queueworkspace_plan_external_imports_for_resultworkspace_plan_starter_projectworkspace_record_reading_checkpointworkspace_resolve_external_referenceworkspace_resolve_external_reference_candidateworkspace_search_external_referenceworkspace_search_theoremsworkspace_update_reference_expansion_policy

Documented tools (0)

From project documentation. A server handshake does not verify each tool’s description or behavior.

Tool descriptions have not been documented here yet.

Tool change history

Compared across complete checks of the same configuration. Tools were listed, not invoked. Input-schema changes are not measured here.

  1. Nov 11, 2026, 03:24 AM UTC

    Compared with Nov 3, 2026, 03:24 AM UTC

    No tool-name changes

  2. Nov 3, 2026, 03:24 AM UTC

    Compared with Oct 26, 2026, 03:23 AM UTC

    No tool-name changes

  3. Oct 26, 2026, 03:23 AM UTC

    Compared with Oct 19, 2026, 02:22 AM UTC

    No tool-name changes

  4. Oct 19, 2026, 02:22 AM UTC

    Compared with Oct 11, 2026, 02:32 AM UTC

    No tool-name changes

  5. Oct 11, 2026, 02:32 AM UTC

    Compared with Oct 3, 2026, 04:15 PM UTC

    No tool-name changes

FAQ

Questions about Papergraph MCP Server

How do I connect Papergraph MCP Server to Claude?
The listing records `uvx --from git+https://github.com/lotchuazzz-crypto/papergraph-mcp.git@v0.6.1 papergraph-mcp` as its setup step. Run it, then follow the repository's instructions for the client configuration; the listing names Claude Code, Cursor and Claude Desktop as compatible clients.
Is Papergraph MCP Server free?
The listed licence is MIT. Check the upstream terms for permitted use and commercial requirements; a public repository does not by itself mean the software is free or open source. Connected APIs and hosted services may have separate charges.
What can Papergraph MCP Server do?
MCPVault has not yet recorded the tool list for Papergraph MCP Server; it is captured when the server passes a live MCP handshake. The description above is what the project publishes.