download_structure

MCP tool from PDB MCP Server by Augmented-Nature

Download structure coordinates in various formats (PDB, mmCIF, mmTF, XML)

How to use it

download_structure is exposed by the PDB MCP Server MCP server. Add the server to your MCP client (Claude Desktop, Cursor, Windsurf and others), and the download_structure tool becomes available to the model automatically. See the full listing for setup details and every tool this server provides.

FULL PDB MCP SERVER LISTING

Other tools in PDB MCP Server (4)

get_structure_info

Get detailed information for a specific PDB structure

get_structure_quality

Get structure quality metrics and validation data

search_by_uniprot

Find PDB structures associated with a UniProt accession

search_structures

Search PDB database for protein structures by keyword, protein name, or PDB ID